Diversity of mitochondrial DNA in 3 species of great whales before and after modern whaling.

The 20th century commercial whaling industry severely reduced populations of great whales throughout the Southern Hemisphere. The effect of this exploitation on genetic diversity and population structure remains largely undescribed. Here, we compare pre- and post-whaling diversity of mitochondrial DNA (mtDNA) control region sequences for 3 great whales in the South Atlantic, such as the blue, humpback, and fin whale. Pre-whaling diversity is described from mtDNA extracted from bones collected near abandoned whaling stations, primarily from the South Atlantic island of South Georgia. These bones are known to represent the first stage of 20th century whaling and thus pre-whaling diversity of these populations. Post-whaling diversity is described from previously published studies reporting large-scale sampling of living whales in the Southern Hemisphere. Despite relatively high levels of surviving genetic diversity in the post-whaling populations, we found evidence of a probable loss of mtDNA lineages in all 3 species. This is evidenced by the detection of a large number of haplotypes found in the pre-whaling samples that are not present in the post-whaling samples. A rarefaction analysis further supports a loss of haplotypes in the South Atlantic humpback and Antarctic blue whale populations. The bones from former whaling stations in the South Atlantic represent a remarkable molecular archive for further investigation of the decline and ongoing recovery in the great whales of the Southern Hemisphere.

Effective population size and the genetic consequences of commercial whaling on the humpback whales (Megaptera novaeangliae) from Southwestern Atlantic Ocean.

Genotypes of 10 microsatellite loci of 420 humpback whales from the Southwestern Atlantic Ocean population were used to estimate for the first time its contemporary effective (Ne) and census (Nc) population sizes and to test the genetic effect of commercial whaling. The results are in agreement with our previous studies that found high genetic diversity for this breeding population. Using an approximate Bayesian computation approach, the scenario of constant Ne was significantly supported over scenarios with moderate to strong size changes during the commercial whaling period. The previous generation Nc (Ne multiplied by 3.6), which should corresponds to the years between around 1980 and 1990, was estimated between ~2,600 and 6,800 whales (point estimate ~4,000), and is broadly compatible with the recent abundance surveys extrapolated to the past using a growth rate of 7.4% per annum. The long-term Nc in the constant scenario (point estimate ~15,000) was broadly compatible (considering the confidence interval) with pre-whaling catch records estimates (point estimate ~25,000). Overall, our results shown that the Southwestern Atlantic Ocean humpback whale population is genetically very diverse and resisted well to the strong population reduction during commercial whaling.

Effective population size and the genetic consequences of commercial whaling on the humpback whales (Megaptera novaeangliae) from Southwestern Atlantic Ocean

Abstract Genotypes of 10 microsatellite loci of 420 humpback whales from the Southwestern Atlantic Ocean population were used to estimate for the first time its contemporary effective (Ne) and census (Nc) population sizes and to test the genetic effect of commercial whaling. The results are in agreement with our previous studies that found high genetic diversity for this breeding population. Using an approximate Bayesian computation approach, the scenario of constant Ne was significantly supported over scenarios with moderate to strong size changes during the commercial whaling period. The previous generation Nc (Ne multiplied by 3.6), which should corresponds to the years between around 1980 and 1990, was estimated between ~2,600 and 6,800 whales (point estimate ~4,000), and is broadly compatible with the recent abundance surveys extrapolated to the past using a growth rate of 7.4% per annum. The long-term Nc in the constant scenario (point estimate ~15,000) was broadly compatible (considering the confidence interval) with pre-whaling catch records estimates (point estimate ~25,000). Overall, our results shown that the Southwestern Atlantic Ocean humpback whale population is genetically very diverse and resisted well to the strong population reduction during commercial whaling.

Multiple processes drive genetic structure of humpback whale (Megaptera novaeangliae) populations across spatial scales.

Elucidating patterns of population structure for species with complex life histories, and disentangling the processes driving such patterns, remains a significant analytical challenge. Humpback whale (Megaptera novaeangliae) populations display complex genetic structures that have not been fully resolved at all spatial scales. We generated a data set of nuclear markers for 3575 samples spanning the seven breeding stocks and substocks found in the South Atlantic and western and northern Indian Oceans. For the total sample, and males and females separately, we assessed genetic diversity, tested for genetic differentiation between putative populations and isolation by distance, estimated the number of genetic clusters without a priori population information and estimated rates of gene flow using maximum-likelihood and Bayesian approaches. At the ocean basin scale, structure is governed by geographical distance (IBD P < 0.05) and female fidelity to breeding areas, in line with current understanding of the drivers of broadscale population structure. Consistent with previous studies, the Arabian Sea breeding stock was highly genetically differentiated (FST 0.034-0.161; P < 0.01 for all comparisons). However, the breeding stock boundary between west South Africa and east Africa was more porous than expected based on genetic differentiation, cluster and geneflow analyses. Instances of male fidelity to breeding areas and relatively high rates of dispersal for females were also observed between the three substocks in the western Indian Ocean. The relationships between demographic units and current management boundaries may have ramifications for assessments of the status and continued protections of populations still in recovery from commercial whaling.

A quarter of a world away: female humpback whale moves 10,000 km between breeding areas.

Fidelity of individual animals to breeding sites is a primary determinant of population structure. The degree and scale of philopatry in a population reflect the fitness effects of social facilitation, ecological adaptation and optimal inbreeding. Patterns of breeding-site movement and fidelity are functions of social structure and are frequently sex biased. We report on a female humpback whale (Megaptera novaeangliae) first identified by natural markings off Brazil that subsequently was photographed off Madagascar. The minimum travel distance between these locations is greater than 9800 km, approximately 4000 km longer than any previously reported movement between breeding grounds, more than twice the species' typical seasonal migratory distance and the longest documented movement by a mammal. It is unexpected to find this exceptional long-distance movement between breeding groups by a female, as models of philopatry suggest that male mammals move more frequently or over longer distances in search of mating opportunities. While such movement may be advantageous, especially in changeable or unpredictable circumstances, it is not possible to unambiguously ascribe causality to this rare observation. This finding illustrates the behavioural flexibility in movement patterns that may be demonstrated within a typically philopatric species.

Microsatellite genetic characterization of the humpback whale (Megaptera novaeangliae) breeding ground off Brazil (breeding stock A).

The Southwestern Atlantic Ocean humpback whales wintering ground (breeding stock A) are distributed along the Brazilian coast (5-23 degrees S), and their main mating and calving ground is in the Abrolhos Bank. We investigated genetic diversity, population structure, and relatedness of individuals sampled from the entire Southwest Atlantic humpback whale population. A total of 275 individuals sampled from 2 subregions (Abrolhos Bank, n = 229 and Praia do Forte, n = 46) were screened for 9 microsatellite loci. This population showed a high level of allelic diversity (A = 12.1) and a high mean observed heterozygosity (H(O) = 0.733). No signal of significant genetic bottleneck was detected in accordance with the mitochondrial DNA data. We find no evidence of temporal (between years) genetic structure as well as no genetic differentiation between whales from the 2 subregions of the Brazilian breeding ground. We observed that the proportion of males and females in this population was approximately 1:1, which differs from the male-biased sex ratio observed in other breeding grounds. The data obtained through this study provided no evidence of kinship associations within social groups. Finally, a female sampled off South Georgia Islands showed a putative parent-offspring relationship with a female off Abrolhos Bank, supporting the migratory link between these 2 areas.

Population structure of humpback whales from their breeding grounds in the South Atlantic and Indian Oceans.

Although humpback whales are among the best-studied of the large whales, population boundaries in the Southern Hemisphere (SH) have remained largely untested. We assess population structure of SH humpback whales using 1,527 samples collected from whales at fourteen sampling sites within the Southwestern and Southeastern Atlantic, the Southwestern Indian Ocean, and Northern Indian Ocean (Breeding Stocks A, B, C and X, respectively). Evaluation of mtDNA population structure and migration rates was carried out under different statistical frameworks. Using all genetic evidence, the results suggest significant degrees of population structure between all ocean basins, with the Southwestern and Northern Indian Ocean most differentiated from each other. Effective migration rates were highest between the Southeastern Atlantic and the Southwestern Indian Ocean, followed by rates within the Southeastern Atlantic, and the lowest between the Southwestern and Northern Indian Ocean. At finer scales, very low gene flow was detected between the two neighbouring sub-regions in the Southeastern Atlantic, compared to high gene flow for whales within the Southwestern Indian Ocean. Our genetic results support the current management designations proposed by the International Whaling Commission of Breeding Stocks A, B, C, and X as four strongly structured populations. The population structure patterns found in this study are likely to have been influenced by a combination of long-term maternally directed fidelity of migratory destinations, along with other ecological and oceanographic features in the region.

Turismo de observação de cetáceos como ferramenta no estudo do comportamento de baleias Jubarte (Megaptera novaeangliae) / Whale-watching as a tool to study humpback whales (Megaptera novaeangliae) behavior

O comportamento das baleias jubarte foi observado para detectar diferenças nas probabilidades de ocorrência de determinadas categorias comportamentais observadas a partir de cruzeiros de pesquisa e de turismo. Foram analisados dados de 256 grupos observados durante os cruzeiros de pesquisa e 122 grupos em cruzeiros de turismo, nas temporadas de 2001 a 2003, no litoral norte da Bahia. A análise de rede bayesiana forneceu maiores probabilidades de ocorrência para as categorias do tipo deslocamento, socialização e agressivo, enquanto a análise comparativa não forneceu diferenças expressivas entre as duas categorias de cruzeiro. De acordo com as probabilidades de ocorrência da conduta repouso para grupos com filhote e devido a uma possível interrupção do ato de amamentação causada pelas embarcações, sugere-se uma distância mais conservativa e um menor tempo de permanência com esses grupos(AU)

Humpback whales behavior was observed to determine the existence of differences between observations occurring from research vessels vs. whale-watching vessels. A total of 256 groups were observed from research vessels and 122 groups from whale-watching vessels during the breeding seasons from 2001 through 2003 in the northern coast of the state of Bahia, Brazil. A Bayesian network analysis yielded greatest probabilities of occurrence of the behavioral conducts traveling, socialization and aggressive. Significant behavioral differences between cruise types were not obtained through comparative analysis. Given the probability of occurrence of resting conducts in calf pods and the possibility of the interruption of suckling caused by vessels, it is suggested that a more conservative distance and shorter visits be adopted by whale-watching groups(AU)

Turismo de observação de cetáceos como ferramenta no estudo do comportamento de baleias Jubarte (Megaptera novaeangliae) / Whale-watching as a tool to study humpback whales (Megaptera novaeangliae) behavior

O comportamento das baleias jubarte foi observado para detectar diferenças nas probabilidades de ocorrência de determinadas categorias comportamentais observadas a partir de cruzeiros de pesquisa e de turismo. Foram analisados dados de 256 grupos observados durante os cruzeiros de pesquisa e 122 grupos em cruzeiros de turismo, nas temporadas de 2001 a 2003, no litoral norte da Bahia. A análise de rede bayesiana forneceu maiores probabilidades de ocorrência para as categorias do tipo deslocamento, socialização e agressivo, enquanto a análise comparativa não forneceu diferenças expressivas entre as duas categorias de cruzeiro. De acordo com as probabilidades de ocorrência da conduta repouso para grupos com filhote e devido a uma possível interrupção do ato de amamentação causada pelas embarcações, sugere-se uma distância mais conservativa e um menor tempo de permanência com esses grupos.

Humpback whales behavior was observed to determine the existence of differences between observations occurring from research vessels vs. whale-watching vessels. A total of 256 groups were observed from research vessels and 122 groups from whale-watching vessels during the breeding seasons from 2001 through 2003 in the northern coast of the state of Bahia, Brazil. A Bayesian network analysis yielded greatest probabilities of occurrence of the behavioral conducts traveling, socialization and aggressive. Significant behavioral differences between cruise types were not obtained through comparative analysis. Given the probability of occurrence of resting conducts in calf pods and the possibility of the interruption of suckling caused by vessels, it is suggested that a more conservative distance and shorter visits be adopted by whale-watching groups.